User guide
==========

Start with :doc:`installation`, then choose :doc:`gui_quickstart` to use the
desktop application or :doc:`api_quickstart` to extract features in Python.
GUI and batch workflows use the case-folder layout in :doc:`data_structure`.

.. toctree::
   :maxdepth: 1

   installation
   Data structure <data_structure>
   gui_workflows
   api_index
   concepts
   results
   troubleshooting